parameters for AlignerN More...

Inheritance diagram for LocARNA::AlignerNParams:

Collaboration diagram for LocARNA::AlignerNParams:

Public Types
using	valid_args = tuple_cat_type_t< AlignerParams::valid_args, std::tuple< AlignerNParams::sparsification_mapperA, AlignerNParams::sparsification_mapperB > >

Public Types inherited from LocARNA::AlignerParams
using	valid_args = std::tuple< seqA, seqB, scoring, no_lonely_pairs, struct_local, sequ_local, free_endgaps, DO_TRACE, trace_controller, max_diff_am, max_diff_at_am, stacking, constraints >

Public Member Functions
	DEFINE_NAMED_ARG_FEATURE (sparsification_mapperA, const SparsificationMapper *)

	DEFINE_NAMED_ARG_FEATURE (sparsification_mapperB, const SparsificationMapper *)

template<class... Args>
	AlignerNParams (Args... argpack)

Public Member Functions inherited from LocARNA::AlignerParams
	DEFINE_NAMED_ARG_FEATURE (seqA, const Sequence *)

	DEFINE_NAMED_ARG_FEATURE (seqB, const Sequence *)

	DEFINE_NAMED_ARG_FEATURE (scoring, const Scoring *)

	DEFINE_NAMED_ARG_FEATURE (trace_controller, const TraceController *)

	DEFINE_NAMED_ARG_DEFAULT_FEATURE (no_lonely_pairs, bool, false)

	DEFINE_NAMED_ARG_DEFAULT_FEATURE (struct_local, bool, false)

	DEFINE_NAMED_ARG_DEFAULT_FEATURE (sequ_local, bool, false)

	DEFINE_NAMED_ARG_DEFAULT_FEATURE (free_endgaps, FreeEndgaps, FreeEndgaps("----"))

	DEFINE_NAMED_ARG_DEFAULT_FEATURE (DO_TRACE, bool, true)

	DEFINE_NAMED_ARG_DEFAULT_FEATURE (max_diff_am, int, -1)

	DEFINE_NAMED_ARG_DEFAULT_FEATURE (max_diff_at_am, int, -1)

	DEFINE_NAMED_ARG_DEFAULT_FEATURE (stacking, bool, false)

	DEFINE_NAMED_ARG_DEFAULT_FEATURE (constraints, const AnchorConstraints *, nullptr)

template<class... Args>
	AlignerParams (Args... argpack)

Additional Inherited Members
Protected Member Functions inherited from LocARNA::AlignerParams
template<class ArgTuple >
void	construct (const ArgTuple &args)

Detailed Description

parameters for AlignerN

Constructor & Destructor Documentation

template<class... Args>

LocARNA::AlignerNParams::AlignerNParams ( Args... argpack )

inline

Construct with named arguments

The documentation for this class was generated from the following file: