LocARNA::FreeEndgaps Class Reference

Description of free end gaps. More...

#include <free_endgaps.hh>

Public Member Functions
	FreeEndgaps (const std::string &d)
	Construct from string description. More...
bool	allow_left_1 () const
bool	allow_right_1 () const
bool	allow_left_2 () const
bool	allow_right_2 () const
FreeEndgaps	reverse () const

Detailed Description

Description of free end gaps.

Decodes the description given by a string of 4 characters '+'/'-' and provides methods with reasonable names.

Constructor & Destructor Documentation

FreeEndgaps()

LocARNA::FreeEndgaps::FreeEndgaps ( const std::string &  d )

inlineexplicit

Construct from string description.

Parameters

d	description given by a string of 4 characters '+'/'-'

Note

the string description is suited to specify free end gaps in this way on the command line

Member Function Documentation

allow_left_1()

bool LocARNA::FreeEndgaps::allow_left_1 ( ) const

inline

Are gaps free at left end of first sequences?

Returns

whether free end gaps are allowed

allow_left_2()

bool LocARNA::FreeEndgaps::allow_left_2 ( ) const

inline

Are gaps free at left end of second sequences?

Returns

whether free end gaps are allowed

allow_right_1()

bool LocARNA::FreeEndgaps::allow_right_1 ( ) const

inline

Are gaps free at right end of first sequences?

Returns

whether free end gaps are allowed

allow_right_2()

bool LocARNA::FreeEndgaps::allow_right_2 ( ) const

inline

Are gaps free at right end of second sequences?

Returns

whether free end gaps are allowed

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The documentation for this class was generated from the following file:

• src/LocARNA/free_endgaps.hh