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LocARNA-2.0.0
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This is the complete list of members for LocARNA::AlignerNParams, including all inherited members.
| AlignerNParams(Args... argpack) | LocARNA::AlignerNParams | inline |
| AlignerParams(Args... argpack) | LocARNA::AlignerParams | inline |
| AlignerParams() (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | inlineprotected |
| construct(const ArgTuple &args) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | inlineprotected |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE(no_lonely_pairs, bool, false) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE(struct_local, bool, false) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE(sequ_local, bool, false) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE(free_endgaps, FreeEndgaps, FreeEndgaps("----")) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE(DO_TRACE, bool, true) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE(max_diff_am, int, -1) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE(max_diff_at_am, int, -1) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE(stacking, bool, false) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE(constraints, const AnchorConstraints *, nullptr) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_FEATURE(sparsification_mapperA, const SparsificationMapper *) (defined in LocARNA::AlignerNParams) | LocARNA::AlignerNParams | |
| DEFINE_NAMED_ARG_FEATURE(sparsification_mapperB, const SparsificationMapper *) (defined in LocARNA::AlignerNParams) | LocARNA::AlignerNParams | |
| DEFINE_NAMED_ARG_FEATURE(seqA, const Sequence *) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_FEATURE(seqB, const Sequence *) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_FEATURE(scoring, const Scoring *) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_FEATURE(trace_controller, const TraceController *) (defined in LocARNA::AlignerParams) | LocARNA::AlignerParams | |
| valid_args typedef (defined in LocARNA::AlignerNParams) | LocARNA::AlignerNParams |
1.9.1