parameters for AlignerP More...
#include <aligner_params.hh>
Inheritance diagram for LocARNA::AlignerPParams< T >:
Collaboration diagram for LocARNA::AlignerPParams< T >:
Public Types | |
| using | pf_score_t = T |
| using | valid_args = tuple_cat_type_t< AlignerParams::valid_args, std::tuple< min_am_prob, min_bm_prob, pf_scale > > |
 Public Types inherited from LocARNA::AlignerParams | |
| using | valid_args = std::tuple< seqA, seqB, scoring, no_lonely_pairs, struct_local, sequ_local, free_endgaps, DO_TRACE, trace_controller, max_diff_am, max_diff_at_am, stacking, constraints > |
Public Member Functions | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (min_am_prob, double, 0) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (min_bm_prob, double, 0) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (pf_scale, pf_score_t, 1.0) | |
| template<class... Args> | |
| AlignerPParams (Args... argpack) | |
| Public Member Functions inherited from LocARNA::AlignerParams | |
| DEFINE_NAMED_ARG_FEATURE (seqA, const Sequence *) | |
| DEFINE_NAMED_ARG_FEATURE (seqB, const Sequence *) | |
| DEFINE_NAMED_ARG_FEATURE (scoring, const Scoring *) | |
| DEFINE_NAMED_ARG_FEATURE (trace_controller, const TraceController *) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (no_lonely_pairs, bool, false) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (struct_local, bool, false) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (sequ_local, bool, false) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (free_endgaps, FreeEndgaps, FreeEndgaps("----")) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (DO_TRACE, bool, true) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (max_diff_am, int, -1) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (max_diff_at_am, int, -1) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (stacking, bool, false) | |
| DEFINE_NAMED_ARG_DEFAULT_FEATURE (constraints, const AnchorConstraints *, nullptr) | |
| template<class... Args> | |
| AlignerParams (Args... argpack) | |
Additional Inherited Members | |
| Protected Member Functions inherited from LocARNA::AlignerParams | |
| template<class ArgTuple > | |
| void | construct (const ArgTuple &args) |
Detailed Description
template<typename T>
class LocARNA::AlignerPParams< T >
parameters for AlignerP
Constructor & Destructor Documentation
◆ AlignerPParams()
template<typename T >
template<class... Args>
|
inline |
Construct with named arguments
The documentation for this class was generated from the following file:
- src/LocARNA/aligner_params.hh
