Defines main function of locarna_p. More...
#include <iostream>#include <fstream>#include <sstream>#include <vector>#include "LocARNA/sequence.hh"#include "LocARNA/basepairs.hh"#include "LocARNA/aligner_p.hh"#include "LocARNA/rna_data.hh"#include "LocARNA/arc_matches.hh"#include "LocARNA/edge_probs.hh"#include "LocARNA/ribosum.hh"#include "LocARNA/ribofit.hh"#include "LocARNA/anchor_constraints.hh"#include "LocARNA/trace_controller.hh"#include "LocARNA/multiple_alignment.hh"#include "LocARNA/pfold_params.hh"#include "LocARNA/global_stopwatch.hh"#include "LocARNA/main_helper.icc"#include "LocARNA/options.hh"
Include dependency graph for locarna_p.cc:
Functions | |
| template<typename pf_score_t > | |
| int | run_and_report () |
| Helper of main() of executable locarna_p. More... | |
| int | main (int argc, char **argv) |
| Main function of executable locarna_p. More... | |
Variables | |
| const std::string | VERSION_STRING = (std::string)PACKAGE_STRING |
| Version string (from configure.ac via autoconf system) | |
| command_line_parameters | clp |
| holds command line parameters of locarna | |
| option_def | my_options [] |
| defines command line parameters | |
Detailed Description
Defines main function of locarna_p.
LocARNA-P: global and LOCal Alignment of RNA - Partitition function variant
Copyright (C) Sebastian Will <will(@)informatik.uni-freiburg.de> 2005-
Function Documentation
◆ main()
| int main | ( | int | argc, |
| char ** | argv | ||
| ) |
Main function of executable locarna_p.
- Parameters
-
argc argument counter argv argument vector
- Returns
- success
◆ run_and_report()
template<typename pf_score_t >
| int run_and_report | ( | ) |
Helper of main() of executable locarna_p.
- Returns
- success
