Provide trace probabilities. More...
#include <edge_probs.hh>
Inheritance diagram for LocARNA::TraceProbs:
Collaboration diagram for LocARNA::TraceProbs:
Public Member Functions | |
| TraceProbs (std::istream &in, size_type lenA, size_type lenB) | |
| construct from input stream (sparse format) | |
 Public Member Functions inherited from LocARNA::EdgeProbs | |
| EdgeProbs (std::istream &in, size_type lenA, size_type lenB) | |
| construct from input stream (sparse format) | |
| std::ostream & | write_sparse (std::ostream &out, double threshold) const |
| size_type | lenA () const |
| get the length of the first sequence | |
| size_type | lenB () const |
| get the length of the second sequence | |
| double | prob (size_t i, size_t j) const |
| return the match probability for the two bases | |
Additional Inherited Members | |
| Public Types inherited from LocARNA::EdgeProbs | |
| using | size_type = size_t |
| size | |
| Protected Member Functions inherited from LocARNA::EdgeProbs | |
| std::istream & | read_sparse (std::istream &in, size_type lenA, size_type lenB) |
| void | read_sparse (const std::string &filename, size_type lenA, size_type lenB) |
| Protected Attributes inherited from LocARNA::EdgeProbs | |
| Matrix< double > | probs_ |
| the base match probabilities | |
Detailed Description
Provide trace probabilities.
- See also
- MatchProbs
The documentation for this class was generated from the following file:
- src/LocARNA/edge_probs.hh
