Fitting of a two-step function with position-specific step penalities. More...

#include <fitonoff.hh>

Inheritance diagram for LocARNA::FitOnOffVarPenalty:

Collaboration diagram for LocARNA::FitOnOffVarPenalty:

Public Member Functions
	FitOnOffVarPenalty (numseq_t &x_, numseq_t &penalties_, double beta_)

Public Member Functions inherited from LocARNA::FitOnOff
	FitOnOff (numseq_t &x_, double delta_, double beta_)

double	viterbi (double c0, double c1, bool traceback)

double	best_once_on (double c0, double c1)

pf_t	forward (double c0, double c1)

std::pair< double, double >	optimize (double c0, double c1)

void	write_viterbi_path_compact (std::ostream &out, double c0, double c1)
	writes the ranges in the viterbi path

void	write_viterbi_path (std::ostream &out, double c0, double c1) const
	writes the viterbi path

void	print_table (const std::string &name, const std::vector< bool > &v) const

void	print_table (const std::string &name, const std::vector< pf_t > &v) const

void	print_tables () const

Detailed Description

Fitting of a two-step function with position-specific step penalities.

Constructor & Destructor Documentation

LocARNA::FitOnOffVarPenalty::FitOnOffVarPenalty	(	numseq_t &	x_,
		numseq_t &	penalties_,
		double	beta_
	)

inline

construct with parameters

Parameters

x_	number sequence that we want to fit
penalties_	position dependent penalty for change between a and b
beta_	inverse temperature

The documentation for this class was generated from the following file: