LocARNA::BasePairFilter::Canonical Class Reference

base pair filter to allow only canonical base pairs More...

#include <base_pair_filter.hh>

Inheritance diagram for LocARNA::BasePairFilter::Canonical:

Collaboration diagram for LocARNA::BasePairFilter::Canonical:

Public Member Functions
	Canonical (const std::string &sequence)
	constructor More...
	~Canonical ()
	d'tor
bool	operator() (size_t i, size_t j) const
	check for canonical base pair More...
Public Member Functions inherited from LocARNA::BasePairFilter::Filter
virtual bool	operator() (const bp_t &bp) const

Detailed Description

base pair filter to allow only canonical base pairs

Constructor & Destructor Documentation

Canonical()

LocARNA::BasePairFilter::Canonical::Canonical ( const std::string &  sequence )

inlineexplicit

constructor

Parameters

sequence

rna sequence

Member Function Documentation

operator()()

bool LocARNA::BasePairFilter::Canonical::operator() ( size_t  i, size_t  j  ) const

inlinevirtual

check for canonical base pair

Parameters

i	left end
j	right end

Returns

whether (i,j) forms a canonical basepair in the object's sequence

Reimplemented from LocARNA::BasePairFilter::Filter.

---

The documentation for this class was generated from the following file:

• src/LocARNA/base_pair_filter.hh