LocARNA::BasePairFilter::BPMinLoopSize Class Reference

loop size base pair filter More...

#include <base_pair_filter.hh>

Inheritance diagram for LocARNA::BasePairFilter::BPMinLoopSize:

Collaboration diagram for LocARNA::BasePairFilter::BPMinLoopSize:

Public Member Functions
	BPMinLoopSize (size_t mls)
	constructor More...
	~BPMinLoopSize ()
	d'tor
bool	operator() (size_t i, size_t j) const
	check for minimum loop size More...
Public Member Functions inherited from LocARNA::BasePairFilter::Filter
virtual bool	operator() (const bp_t &bp) const

Detailed Description

loop size base pair filter

Constructor & Destructor Documentation

BPMinLoopSize()

LocARNA::BasePairFilter::BPMinLoopSize::BPMinLoopSize ( size_t  mls )

inlineexplicit

constructor

Parameters

mls	minimum loop size

Member Function Documentation

operator()()

bool LocARNA::BasePairFilter::BPMinLoopSize::operator() ( size_t  i, size_t  j  ) const

inlinevirtual

check for minimum loop size

Parameters

i	left end
j	right end

Returns

whether bp (i,j) satisfies mls

Reimplemented from LocARNA::BasePairFilter::Filter.

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The documentation for this class was generated from the following file:

• src/LocARNA/base_pair_filter.hh