LocARNA::ArcMatch Class Reference

Represents a match of two base pairs (arc match) More...

#include <arc_matches.hh>

Public Types
typedef std::vector< int >::size_type	size_type
	size type
typedef size_type	idx_type
	arc match index
typedef BasePairs__Arc	Arc
	arc

Public Member Functions
	ArcMatch (const Arc *arcA, const Arc *arcB, idx_type idx)
const Arc &	arcA () const
const Arc &	arcB () const
idx_type	idx () const

Detailed Description

Represents a match of two base pairs (arc match)

Maintains pointers to the single arcs (in the base pairs strucures) and an arc match index.

See also

ArcMatches

Constructor & Destructor Documentation

ArcMatch()

LocARNA::ArcMatch::ArcMatch ( const Arc *  arcA, const Arc *  arcB, idx_type  idx  )

inline

Construct with member values

Parameters

arcA	arc in B
arcB	arc in A
idx	index

Member Function Documentation

arcA()

const Arc& LocARNA::ArcMatch::arcA ( ) const

inline

Read access

Returns

the matched arc in A

arcB()

const Arc& LocARNA::ArcMatch::arcB ( ) const

inline

Read access

Returns

the matched arc in B

idx()

idx_type LocARNA::ArcMatch::idx ( ) const

inline

Read access

Returns

(unique) index of arc match

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The documentation for this class was generated from the following file:

• src/LocARNA/arc_matches.hh