LocARNA::Ribosum Member List

This is the complete list of members for LocARNA::Ribosum, including all inherited members.

alphabet() const	LocARNA::Ribosum	inline
am_	LocARNA::Ribosum	protected
arc_alphabet_type typedef	LocARNA::Ribosum
arcmatch_score(char i, char j, char k, char l) const	LocARNA::Ribosum	inline
arcname_alphabet_	LocARNA::Ribosum	protected
base_alphabet_type typedef	LocARNA::Ribosum
basematch_score(char i, char j) const	LocARNA::Ribosum	inline
basename_alphabet_	LocARNA::Ribosum	protected
bm_	LocARNA::Ribosum	protected
char_alphabet_type typedef	LocARNA::Ribosum
char_basename_alphabet_	LocARNA::Ribosum	protected
get_arcmatch_scores() const	LocARNA::Ribosum	inline
get_basematch_scores() const	LocARNA::Ribosum	inline
get_name() const	LocARNA::Ribosum	inline
make_char_alphabet() const	LocARNA::Ribosum	protected
matrix_t typedef	LocARNA::Ribosum
name_	LocARNA::Ribosum	protected
operator<<(std::ostream &out, const Ribosum &ribosum)	LocARNA::Ribosum	friend
read_matrix(std::istream &in, matrix_t &mat, const Alphabet< std::string, N > &names) const	LocARNA::Ribosum	protected
read_ribosum(std::istream &in)	LocARNA::Ribosum	protected
Ribosum(const std::string &filename)	LocARNA::Ribosum	explicit
Ribosum()	LocARNA::Ribosum	protected
set_arcname_alphabet(const std::array< std::string, 16 > &a)	LocARNA::Ribosum	inlineprotected
set_basename_alphabet(const std::array< std::string, 4 > &a)	LocARNA::Ribosum	inlineprotected
string_alphabet() const	LocARNA::Ribosum	inline
write_matrix(std::ostream &out, const matrix_t &mat, const Alphabet< std::string, N > &alph) const	LocARNA::Ribosum	protected
~Ribosum()	LocARNA::Ribosum	virtual