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LocARNA-2.0.0
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This is the complete list of members for LocARNA::PFMatchProbs< pf_score_t >, including all inherited members.
| EdgeProbs(std::istream &in, size_type lenA, size_type lenB) | LocARNA::EdgeProbs | inline |
| EdgeProbs() (defined in LocARNA::EdgeProbs) | LocARNA::EdgeProbs | inlineprotected |
| fail() const (defined in LocARNA::PFMatchProbs< pf_score_t >) | LocARNA::PFMatchProbs< pf_score_t > | inline |
| lenA() const | LocARNA::EdgeProbs | inline |
| lenB() const | LocARNA::EdgeProbs | inline |
| MatchProbs(std::istream &in, size_type lenA, size_type lenB) | LocARNA::MatchProbs | inline |
| MatchProbs() (defined in LocARNA::MatchProbs) | LocARNA::MatchProbs | inlineprotected |
| PFMatchProbs(const RnaData &rnaA, const RnaData &rnaB, const TraceController &trace_controller, const Matrix< double > &sim_mat, const Alphabet< char, 4 > &alphabet, double gap_opening, double gap_extension, double pf_struct_weight, double temp, const FreeEndgaps &free_endgaps, bool flag_local) | LocARNA::PFMatchProbs< pf_score_t > | |
| prob(size_t i, size_t j) const | LocARNA::EdgeProbs | inline |
| probs_ | LocARNA::EdgeProbs | protected |
| read_sparse(std::istream &in, size_type lenA, size_type lenB) | LocARNA::EdgeProbs | protected |
| read_sparse(const std::string &filename, size_type lenA, size_type lenB) | LocARNA::EdgeProbs | protected |
| size_type typedef | LocARNA::PFMatchProbs< pf_score_t > | |
| write_sparse(std::ostream &out, double threshold) const | LocARNA::EdgeProbs | |
| z() const (defined in LocARNA::PFMatchProbs< pf_score_t >) | LocARNA::PFMatchProbs< pf_score_t > | inline |
1.9.1