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LocARNA-2.0.0
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This is the complete list of members for LocARNA::PFGotoh< pf_score_t >, including all inherited members.
| fail() const (defined in LocARNA::PFGotoh< pf_score_t >) | LocARNA::PFGotoh< pf_score_t > | inlineprotected |
| flag_local_ (defined in LocARNA::PFGotoh< pf_score_t >) | LocARNA::PFGotoh< pf_score_t > | protected |
| lenA_ (defined in LocARNA::PFGotoh< pf_score_t >) | LocARNA::PFGotoh< pf_score_t > | protected |
| lenB_ (defined in LocARNA::PFGotoh< pf_score_t >) | LocARNA::PFGotoh< pf_score_t > | protected |
| pf_gotoh(Matrix< pf_score_t > &zM, Matrix< pf_score_t > &zA, Matrix< pf_score_t > &zB, const TraceController &trace_controller, const StralScore &score, const FreeEndgaps &free_endgaps) | LocARNA::PFGotoh< pf_score_t > | protected |
| PFGotoh(const RnaData &rnaA, const RnaData &rnaB, const TraceController &trace_controller, const Matrix< double > &sim_mat, const Alphabet< char, 4 > &alphabet, double gap_opening, double gap_extension, double pf_struct_weight, double temp, const FreeEndgaps &free_endgaps, bool flag_local) | LocARNA::PFGotoh< pf_score_t > | |
| size_type typedef | LocARNA::PFGotoh< pf_score_t > | |
| temp_ (defined in LocARNA::PFGotoh< pf_score_t >) | LocARNA::PFGotoh< pf_score_t > | protected |
| z() const | LocARNA::PFGotoh< pf_score_t > | inline |
| z_ (defined in LocARNA::PFGotoh< pf_score_t >) | LocARNA::PFGotoh< pf_score_t > | protected |
| zA_ | LocARNA::PFGotoh< pf_score_t > | protected |
| zAr_ | LocARNA::PFGotoh< pf_score_t > | protected |
| zB_ | LocARNA::PFGotoh< pf_score_t > | protected |
| zBr_ | LocARNA::PFGotoh< pf_score_t > | protected |
| zM_ | LocARNA::PFGotoh< pf_score_t > | protected |
| zMr_ | LocARNA::PFGotoh< pf_score_t > | protected |
1.9.1