LocARNA::McC_ali_matrices_t Member List

This is the complete list of members for LocARNA::McC_ali_matrices_t, including all inherited members.

a2s(size_t s, size_t i) const	LocARNA::McC_ali_matrices_t	inline
bppm(size_t i, size_t j) const	LocARNA::McC_matrices_base	inline
exp_params() const	LocARNA::McC_matrices_base	inline
expMLbase(size_t i) const	LocARNA::McC_matrices_base	inline
iidx(size_t i, size_t j) const	LocARNA::McC_matrices_base	inline
jidx(size_t i, size_t j) const	LocARNA::McC_matrices_base	inline
kT() const	LocARNA::McC_matrices_base	inline
McC_ali_matrices_t(const MultipleAlignment &ma, const PFoldParams &params)	LocARNA::McC_ali_matrices_t
McC_matrices_base(vrna_fold_compound_t *vc=nullptr)	LocARNA::McC_matrices_base	explicitprotected
pair(size_t c, size_t d) const	LocARNA::McC_matrices_base	inline
pscore(size_t i, size_t j) const	LocARNA::McC_ali_matrices_t	inline
q1k(size_t k) const	LocARNA::McC_matrices_base	inline
qb(size_t i, size_t j) const	LocARNA::McC_matrices_base	inline
qln(size_t l) const	LocARNA::McC_matrices_base	inline
qm(size_t i, size_t j) const	LocARNA::McC_matrices_base	inline
rtype(size_t x) const (defined in LocARNA::McC_matrices_base)	LocARNA::McC_matrices_base	inline
S(size_t s, size_t i) const	LocARNA::McC_ali_matrices_t	inline
S3(size_t s, size_t i) const	LocARNA::McC_ali_matrices_t	inline
S5(size_t s, size_t i) const	LocARNA::McC_ali_matrices_t	inline
scale(size_t i) const	LocARNA::McC_matrices_base	inline
Ss(size_t s) const (defined in LocARNA::McC_ali_matrices_t)	LocARNA::McC_ali_matrices_t	inline
vc() (defined in LocARNA::McC_matrices_base)	LocARNA::McC_matrices_base	inline
vc_	LocARNA::McC_matrices_base	protected
~McC_ali_matrices_t()	LocARNA::McC_ali_matrices_t	virtual
~McC_matrices_base()	LocARNA::McC_matrices_base	virtual