LocARNA::LCSEPM Member List

This is the complete list of members for LocARNA::LCSEPM, including all inherited members.

anchor_annotation()	LocARNA::LCSEPM
calculateLCSEPM(bool quiet)	LocARNA::LCSEPM
LCSEPM(const Sequence &seqA_, const Sequence &seqB_, const PatternPairMap &myPatterns, PatternPairMap &myLCSEPM)	LocARNA::LCSEPM	inline
MapToPS(const std::string &sequenceA, const std::string &sequenceB, PatternPairMap &myMap, const std::string &file1, const std::string &file2)	LocARNA::LCSEPM
output_clustal(const std::string &outfile_name)	LocARNA::LCSEPM
output_locarna(const std::string &sequenceA, const std::string &sequenceB, const std::string &outfile)	LocARNA::LCSEPM
~LCSEPM()	LocARNA::LCSEPM	virtual