This is the complete list of members for LocARNA::AlignerParams, including all inherited members.

AlignerParams(Args... argpack)	LocARNA::AlignerParams	inline
AlignerParams() (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams	inlineprotected
construct(const ArgTuple &args) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams	inlineprotected
DEFINE_NAMED_ARG_DEFAULT_FEATURE(no_lonely_pairs, bool, false) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_DEFAULT_FEATURE(struct_local, bool, false) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_DEFAULT_FEATURE(sequ_local, bool, false) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_DEFAULT_FEATURE(free_endgaps, FreeEndgaps, FreeEndgaps("----")) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_DEFAULT_FEATURE(DO_TRACE, bool, true) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_DEFAULT_FEATURE(max_diff_am, int, -1) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_DEFAULT_FEATURE(max_diff_at_am, int, -1) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_DEFAULT_FEATURE(stacking, bool, false) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_DEFAULT_FEATURE(constraints, const AnchorConstraints *, nullptr) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_FEATURE(seqA, const Sequence *) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_FEATURE(seqB, const Sequence *) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_FEATURE(scoring, const Scoring *) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
DEFINE_NAMED_ARG_FEATURE(trace_controller, const TraceController *) (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams
valid_args typedef (defined in LocARNA::AlignerParams)	LocARNA::AlignerParams